Faculty and Staff

Rumschlag-Booms, E. and Rong, L. Influenza A Virus Entry: Implications in Virulence and Future Therapeutics. Advances in Virology. January 2013.

Ahmet Dirim Arslan, Xiaolong He, Minxiu Wang, Emily Rumschlag-Booms, Lijun Rong, and William T. Beck. A High-Throughput Assay to Identify Small-Molecule Modulators of Alternative Pre-mRNA Splicing. J Biomol Screen 18(2):180-90 (2013).

Rumschlag-Booms E, Hongjie Zhang, D Doel Soejarto, Harry H S Fong, Lijun Rong. One-stone-two-birds, an antiviral screening protocol. J Antiviral Antiretroviral (2011), PMID 22140608.

Rumschlag-Booms E, Guo Y, Wang J, Caffrey M, Rong L., 2009. Comparative analysis between a low pathogenic and a high pathogenic influenza H5 hemagglutinin in cell entry. Virology Journal 2009, 6:76; June 10.

Guo Y, Rumschlag-Booms E*, Wang J, Xiao H, Yu J, Wang J, Guo L, Gao GF, Cao Y, Caffrey M, Rong L., 2009. Analysis of hemagglutinin-mediated entry tropism of H5N1 avian influenza. Virology Journal, 6:39; April 2. *Co-first author

Manicassamy B, Wang J, Rumschlag E, Tymen S, Volchkova V, Volchkov V, Rong L, 2007. Characterization of Marburg virus glycoprotein in viral entry. Virology, 358:79-88.

Undergraduate students are underlined

Krieger, K.L., Mann, E.K.,  Lee, K.G, Bolterstein, E., Jebakumar, D., Ittmann, M.M., Dal Zotto, V.L., Shaban, M., Sreekumar, A., Gassman, N.R.. (2023) Spatial mapping of the DNA adducts in cancer. DNA Repair. 128:103529.

Mitchell, C., Becker, V., DeLoach, J., Nestore, E., Bolterstein, E., & Kohl, K. P. (2022). The Drosophila Mutagen-Sensitivity Gene mus109 Encodes DmDNA2. Genes, 13(2), 312.

Epiney, D. G., Salameh, C., Cassidy, D., Zhou, L. T., Kruithof, J., Milutinović, R., Andreani, T. S., Schirmer, A. E., & Bolterstein, E. (2021). Characterization of Stress Responses in a Drosophila Model of Werner Syndrome. Biomolecules, 11(12), 1868.

Cassidy, D., Epiney D.G., Salameh, C., Zhou, L.T., Salomon, R.N., Schirmer, A.E., McVey, M., and Bolterstein, E. (2019) Evidence for premature aging in a Drosophila model of Werner syndrome. Experimental Gerontology. 127, 110733.

Bolterstein, E., Rivero, R., Marquez, M. and McVey, M. (2014) The Drosophila Werner exonuclease participates in an exonuclease-independent response to replication stress. Genetics. 197(2): 643-52.

Undergraduate students are underlined

von Konrat M, Campbell T, Carter B, Greif M, Bryson M, Larraín J, Trouille L, Cohen S, Gaus E, Qazi A, Ribbens E, Livshultz T, Walker TJ, Suwa T, Peterson T, Rodriguez Y, Vaughn C, Yang C, Aburahmeh S, Carstensen B, de Lange P, Delavoi C, Strauss K, Drag J, Aguero B, Snyder C, Martinec J, Smith A (2018) Using citizen science to bridge taxonomic discovery with education and outreach. Applications in Plant Sciences 6 (2): e1023. https://doi.org/10.1002/aps3.1023

Pivarski M, von Konrat M, Campbell T, Qazi-Lampert AT, Trouille L, Wade H, Davis A, Aburahmeh S, Aguilar J, Alb C, Alferes K, Barker E, Bitikofer K, Boulware KJ, Bruton C, Cao S, Corona Jr. A, Christian C, Demiri K, Evans D, Evans NM, Flavin C, Gillis J, Gogol V, Heublein E, Huang E, Hutchinson J, Jackson C, Jackson OR, Johnson L, Kirihara M, Kivarkis H, Kowalczyk A, Labontu A, Levi B, Lyu I, Martin-Eberhardt S, Mata G, Martinec JL, McDonald B, Mira M, Nguyen M, Nguyen P, Nolimal S, Reese V, Ritchie W, Rodriguez J, Rodriguez Y, Shuler J, Silvestre J, Simpson G, Somarriba G, Ssozi R, Suwa T, Syring C, Thirthamattur N, Thompson K, Vaughn C, Viramontes MR, Wong CS, Wszolek L (2022) People-Powered Research and Experiential Learning: Unravelling Hidden Biodiversity. Research Ideas and Outcomes 8: e83853. https://doi.org/10.3897/rio.8.e83853 

LIU Min-guo, Campbell T, Wei LI, WANG Xi-qing. A skeleton-image-based method for analyzing architectural diversity in maize plants. Journal of Integrative Agriculture. 2023, 22(12): 0 https://doi.org/10.1016/j.jia.2023.05.017 

Monick, Sarah, Vineet Mohanty, Mariam Khan, Gowtham Yerneni, Raj Kumar, Jorge A. Cantu, Shunsuke Ichi, Guifa Xi, Bai Ram Singh, Tadanori Tomita, and Chandra Shekhar Mayanil. "A Phenotypic Switch of Differentiated Glial Cells to Dedifferentiated Cells Is Regulated by Folate Receptor α." STEM CELLS (2019).

Wiwatpanit, Teerawat*, Sarah M. Lorenzen*, Jorge A. Cantú*, Chuan Zhi Foo, Ann K. Hogan, Freddie Márquez, John C. Clancy, Matthew J. Schipma, Mary Ann Cheatham, Anne Duggan, and Jaime Garcia-Anoveros. "Trans-differentiation of outer hair cells into inner hair cells in the absence of INSM1." Nature 563, no. 7733 (2018): 691. *Equal Contribution

Nimrod Miller, Zhihua Feng, Brittany M. Edens, Ben Yang, Han Shi, Christie C. Sze, Benjamin Taige Hong, Susan C. Su, Jorge A. Cantu, Jacek Topczewski, Thomas O. Crawford, Chien-Ping Ko, Charlotte J. Sumner, Long Ma, Yong-Chao Ma. "Non-aggregating tau phosphorylation by cyclin-dependent kinase 5 contributes to motor neuron degeneration in spinal muscular atrophy." Journal of Neuroscience 35, no. 15 (2015): 6038-6050.

Remis, Natalie N., Teerawat Wiwatpanit, Andrew J. Castiglioni, Emma N. Flores, Jorge A. Cantú, and Jaime Garcia-Anoveros. "Mucolipin co-deficiency causes accelerated endolysosomal vacuolation of enterocytes and failure-to-thrive from birth to weaning." PLoS genetics 10, no. 12 (2014): e1004833.

Cantu, Jorge A., G. Parker Flowers, and Jacek Topczewski. "Notum homolog plays a novel role in primary motor innervation." Journal of Neuroscience 33, no. 5 (2013): 2177-2187.

Klaper, R., S. Frankel, and M.R. Berenbaum (1996). Anthocyanin content and UVB sensitivity in Brassica rap. Photochemistry and Photobiology, 63(6), 811-813. 

Frankel, S., G.E. Robinson, and M.R. Berenbaum. Antioxidant capacity and correlated characteristics of 14 unifloral honeys. Journal of Apicultural Research. b1998.b37(1):27-31.

Frankel, S., & Berenbaum, M. (1999). Effects of Light Regime on Antioxidant Content of Foliage in a Tropical Forest Community 1. Biotropica, 31(3), 422-429.

Undergraduate students are underlined

Geddes, P., L. Murphy, Y. Astudillo-Scalia, D. Blasini, S. Nugent, M. J. Rios, A. Schirmer, and J. P. Olfelt. 2021. Microsatellite markers reveal unprecedented high frequencies of hybridization among Typha species in the Midwestern US. Wetlands 41(2021): 1-9.  

Pini, A.K. and P. Geddes. 2020. Fungi are capable of mycoremediation of river water contaminated with E. coli. Water, Air, and Soil Pollution 231:83. 

Geddes, P. 2019. The invasion of the cattails. Podcast. In Defense of Plants. http://www.indefenseofplants.com/podcast/2019/4/21/ep-209-invasion-of-the-cattails

Volesky, L.A., S. Iqbal, J.J. Kelly, and P. Geddes. 2018. Relationships of native and exotic Phragmites australis to wetland ecosystem properties. Wetlands 38(3):577-589. 

Gorgis, T., Habib, N. and Mungre, S. (2010), Effect of Methylglyoxal on BV-2 Cells. FASEB J, 24: lb132-lb132. https://doi.org/10.1096/fasebj.24.1_supplement.lb132

Habib, N. and Mungre, S. (2010), Oxidative Stress Injury To PC12 Cells Under Glycating Conditions. FASEB J, 24: 485.7-485.7. https://doi.org/10.1096/fasebj.24.1_supplement.485.7

Habib, N., Goswami, G. and Mungre, S. (2010), Inflammatory Cytokines Induce Oxidative Stress And Apoptosis In PC12 Cells. FASEB J, 24: 485.8-485.8. https://doi.org/10.1096/fasebj.24.1_supplement.485.8

Kimble, M. and A. Schirmer. (2012) General Genetics: Laboratory Manual. Kendall/Hunt Publishing Co. Dubuque, Iowa

Spear TT, Riley TP, Lyons GE, Callender GG, Roszkowski JJ, Wang Y, Simms PE, Scurti GM, Foley KC, Murray DC, Hellman LM, McMahan RH, Iwashima M, Garrett-Mayer E, Rosen HR, Baker BM, Nishimura MI. Hepatitis C virus-cross-reactive TCR gene-modified T cells: a model for immunotherapy against diseases with genomic instability.J Leukoc Biol. 2016 Sep;100(3):545-57.

Zloza A, Lyons GE, Schenkel JM, Moore TV, Lacek AT, O’Sullivan JA, Varanasi V, et al. NKGD2 signalling on CD8+ T cells represses T-bet and rescues CD4- unhelped CD8 + T cell memory recall but not effector responses. Nature Medicine. 2012 Feb 26; 18(3):422-8.

Zloza A, Lyons GE, Chlewicki LK, Kohlhapp FJ, O'Sullivan JA, Lacek AT, Moore TV, Jagoda MC, Kumar V, Guevara-Patiño JA.  Engagement of NK receptor NKG2D, but not 2B4, results in self reactive CD8+ T cells and autoimmune vitiligo. Autoimmunity. 2011 Dec; 44(8):599-606.

Zloza A, Jagoda MC, Lyons GE, Graves MC, Kohlhapp FJ, O'Sullivan JA, Lacek AT, Nishimura MI, Guevara-Patiño JA. CD8 co-receptor promotes susceptibility of CD8+ T cells to transforming growth factor-β (TGF-β)-mediated suppression. Cancer Immunol Immunother. 2011 Feb; 60(2):291-7.

Lyons, GE, McCracken J, O’Sullivan J, Guevara-Patino J.  RAE1-e Signaling Rescues “Helpless” CD8+ T cell Memory Responses.  Journal of Exp. Medicine. January, 2011.

Sanchez, J.C., Carrillo, M., Pandey, S., Noda, M., Aldama, L., Feliz, D., Claesson, E., Wahlgren, Y., Tracy, G., Duong, P., Nugent, A.C., Field, A., Šrajer, V., Kupitz, C., Iwata, S., Nango, E., Tanaka, R.,  Tanaka, T., Fangjia, L., Tono, K., Owada, S., Westenhoff, S., Schmidt, M., and Stojković, E.A. (2019) "High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures" Structural Dynamics. 6: 054701.

Woitowich, N.C., Halavaty, A.S., Waltz, P., Kupitz, C., Valera, J., Tracy, G., Gallagher, K.D., Claesson, E., Nakane, T., Pandey, S., Nelson, G., Tanaka, R., Nango, E., Mizohata, E., Owada, S., Tono, K., Joti, Y., Nugent, A.C., Patel, H., Mapara, A.,  Hopkins, J., Duong, P., Bizhga, D., Kovaleva, S.E., St. Peter, R., Hernandez, C.N., Ozarowski, W.B., Roy-Chowdhuri, S., Yang, J., Edlund, P., Takala, H., Ihalainen, J., Brayshaw, J., Norwood, T., Poudyal, I., Fromme, P., Spence, J.C.H., Moffat, K., Westenhoff, S., Schmidt, M., and Stojković, E.A. (2018) "Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome" IUCrJ. 5: 619-634.

Björling, A., Berntsson, O.,  Takala, H., Gallagher, K.D., Patel, H.,  Gustavsson, E., St. Peter, R., Duong, P., Nugent, A., Zhang, F., Berntsen, P., Appio, R., Rajkovic, I., Lehtivuori, H., Panman, M.R., Hoernke, M., Niebling, S., Harimoorthy, R., Lamparter, T., Stojković, E.A., Ihalainen, J.A., Westenhoff, S. (2015) “Ubiquitous Structural Signaling in Bacterial Phytochromes.” Journal of Physical Chemistry Letters. 6: 3379–3383.

Nuss K, Warneke M. Life span, reproductive output, and reproductive opportunity in captive Goeldi's monkeys (Callimico goeldii). Zoo Biol. 2010 Jan-Feb;29(1):1-15. PubMed PMID: 20131357. 

Yost, J. L., L. M. Egerton-Warburton, K. M. Schreiner, C. E. Palmer, and A. E. Hartemink. (2016). Impact of Restoration and Management on Aggregation and Organic Carbon Accumulation in Urban Grasslands. Soil Sci. Soc. Am. J. 80:992-1002. doi:10.2136/sssaj2015.10.0383

Middleton, E. L., S. Richardson, L. Koziol, C.E. Palmer, Z. Yermakov, J. A. Henning, P. A. Schultz, and J. D. Bever. (2015). Locally adapted arbuscular mycorrhizal fungi improve vigor and resistance to herbivory of native prairie plant species. Ecosphere 6(12):276. doi:10.1890/ES15-00152.1

Yost, J., C. Palmer, and L. M. Egerton-Warburton. (2014). The contribution of soil aggregates to carbon sequestration in restored urban grasslands. In: A. Hartemink and K. McSweeney (Eds.) Progress in Soil Science Series: Soil Carbon (147-154). Heidelburg, Germany: Springer.

Undergraduate students are underlined

Prete FR, Schirmer AE, Patel S, Carrion C, Prete GM, van Alphen B, Svenson GJ (2019). The first analysis of discontinuous ventilatory abdominal pulsations in praying mantises. Fragmenta Entomologica, 51: 29-39 https://rosa.uniroma1.it/rosa02/fragmenta_entomologica/article/view/332/346

Schirmer A, Prete FR, Mantes ES, Urdiales AF, Bogue W (2014) Circadian rhythms affect electroretinogram, compound eye color, striking behavior and locomotion of the praying mantis Hierodula patellifera. Journal Experimental Biology, 217: 3853-3861 https://pubmed.ncbi.nlm.nih.gov/25214491/

Prete FR, R Theis, Dominguez S, Bogue W  (2013) Visual Stimuli Eliciting Tracking and Striking in the Praying Mantises, Parasphendale affinis (Giglio-Tos), Popa spurca (Stål), and Sphodromantis lineola (Burmeister). Journal of Experimental Biology, 216: 4443-53

Popkiewicz B, FR Prete (2013) Macroscopic Characteristics of the Praying Mantis Electroretinogram, Journal of Insect Physiology, 59: 812–823

Prete FR, Dominguez S, Komito JL, Theis R, Dominguez JM, Hurd LE, Svenson GJ, (2013) Appetitive Responses to Computer-Generated Visual Stimuli by Female Rhombodera basalis, Deroplatys lobata, Hierodula membranacea, and Miomantis sp. (Insecta: Mantodea), Journal of Insect Behavior, 26: 261-282. https://link.springer.com/article/10.1007/s10905-012-9340-x

A Totally, Unabashedly Incomplete Book About Bugs (Prairie House Gallery Press, 2018)

Undergraduate students are underlined. 

Maki, Erik T., Georgina Jaimes, and Beth A. Reinke. Water turbidity and plant density influence painted turtle shell shape. Herpetologica 79(3). DOI: https://doi.org/10.1655/Herpetologica-D-22-00006.

Horn, Kelsey, Grascen Shidemantle, Isabela Velasquez, Emily Ronan, Jurnee Blackwood, Beth A. Reinke, and Jessica Hua. 2023. Evaluating the interactive effects of artificial light at night and background color on tadpole crypsis, background adaptation efficacy, and growth. Environmental Pollution (2023): 122056.

McKnight, Donald T….Paige Boban…Beth A. Reinke…and 25 other authors. Nocturnal basking in freshwater turtles: a global assessment. 2023. Global Ecology and Conservation. DOI: https://doi.org/10.1016/j.gecco.2023.e02444 

Reinke, Beth A…. Bronikowski, A., and David Miller (+112 authors). Diverse aging rates in ectothermic tetrapods provide insights for the evolution of aging and longevity. 2022. Science 376 (6600): 1459-1466. DOI: 10.1126/science.abm0151

Reinke, Beth A., David Miller, and Fredric Janzen. 2019. What have long-term studies taught us about population dynamics? Annual Review of Ecology, Evolution, and Systematics 50:11.1-11.18. Invited. DOI: 10.1146/annurev-ecolsys-110218-024717. 

Undergraduate students are underlined

Schirmer AE, Kumar V, Schook A, Song EJ, Marshall MS and Takahashi JS (2023). Cry1 expression during postnatal development is critical for the establishment of normal circadian period. Front. Neurosci. 17:1166137. doi: 10.3389/fnins.2023.1166137

Epiney, D., Salameh, C., Cassidy, D., Zhou, L., Kruithof, J., Milutinović, R., Andreani, T., Schirmer, A.E., and Bolterstein, E. (2021). Characterization of Stress Responses in a Drosophila Model of Werner Syndrome. Biomolecules, 11(12), 1868. http://dx.doi.org/10.3390/biom11121868

Schirmer, A. E., Gallemore, C., Liu, T., Magle, S., DiNello, E., Ahmed, H., & Gilday, T. (2019). Mapping behaviorally relevant light pollution levels to improve urban habitat planning. Scientific reports, 9(1), 1-13.

Smarr, B. L. and Schirmer, A. E. (2018). 3.4 million real-world learning management system logins reveal the majority of students experience social jet lag correlated with decreased performance. Scientific Reports 8, 4793.

Schirmer, A. E., Prete, F. R., Mantes, E. S., Urdiales, A. F., Bogue, W. (2014) Circadian Rhythms Affect the Electroretinogram, Compound Eye Color, Striking Behavior, and Locomotion of the Praying Mantis, Hierodula patellifera (Serville).  The Journal of Experimental Biology 217: 3853-3861.

Slate, J. E., Adler, R. F., Hibdon Jr., J. E., Mayle, S. T., Kim, H., and Srinivas, S.  2019.  A multidisciplinary approach to incorporating computational thinking in STEM courses for preservice teachers.  In (R. M. Reardon & J. Leonard, eds) Integrating Digital Technology in Education, Information Age Publishing Inc.: Charlotte, N.C.

Lo, T.-W., Bennett, D.C., Goodman, S.J., and Stern, M.J. (2010). Caenorhabditis elegans fibroblast growth factor receptor signaling can occur independently of the multi-substrate adaptor FRS2. Genetics 185: 537-547. PMID: 20308281

Kam, N., Kugler, H., Marelly, R., Appleby, L., Fisher J, Pnueli, A., Harel, D., Stern, M.J., Hubbard, E.J. (2008). A scenario-based approach to modeling development: a prototype model of C. elegans vulval fate specification. Dev. Biol. 323: 1-5. PMID: 18706404

Goodman, S.J., Branda, C.S., Robinson, M.K., Burdine, R.D. and Stern, M.J. (2003). Alternative splicing affecting a novel domain in the C. elegans EGL-15 FGF receptor confers functional specificity. Development 130: 3757-3766 PMID: 12835392

Mihaylova, V.T., Borland, C.Z., Manjarrez, L., Stern, M.J., and Sun, H. (1999). The PTEN tumor suppressor homolog in C. elegans regulates longevity and dauer formation in an insulin-receptor like signaling pathway. Proc. Natl. Acad. Sci. U.S.A. 96: 7427-7432. PMID: 10377431

Burdine, R.D., Branda, C.S. and Stern, M.J. (1998). EGL-17(FGF) expression coordinates the attraction of the migrating sex myoblasts with vulval induction in C. elegans. Development 125: 1083-1093. PMID: 9463355

Clark, S.G., Stern, M.J., and Horvitz, H.R. (1992). C. elegans cell-signalling gene sem-5
encodes a protein with SH2 and SH3 domains. Nature 356: 340-344. PMID: 1372395

Thomas, J.H., Stern, M.J. and Horvitz, H.R. (1990). Cell interactions coordinate the
development of the C. elegans egg-laying system. Cell 62: 1041-1052. PMID: 1821851

Stern, M.J., Ames, G.F.-L., Smith, N.H., Robinson, E.C. and Higgins, C.F. (1984). Repetitive Extragenic Palindromic Sequences: A major component of the bacterial genome. Cell 37: 1015-1026. PMID:  6378385

2013    Fixen, K.R., A.W. Baker^, E. A. Stojković, J. T. Beatty and C.S. Hardwood. Chromophore-independent modulation of photosynthesis by bacteriophytochromes in response to low light. Proc Natl Acad Sci USA 111 (2): E237-44.

2013    Neider, J., E. A. Stojković, K. Moffat, K. Forest, T. Lamparter, R. Bittl and J.T.M. Kennis. (2013) Pigment-Protein Interactions in Phytochromes Probed by Fluorescence Line Narrowing Spectroscopy. J Phys Chem B 117(48):14940-50

2012    F. G. Tobias^, A. Gawedzka^, M. S. Goldmeier^, A. C. Sakols^, E. A. Stojković, S. Tsonchev, and K.T. Nicholson, “Scanning Probe Microscopy of Bacterial Red-Light Photoreceptors”, MRS Proceedings, 1465, mrss12-1465-ss07-12.

2011  Woitowich, N.C., S. E. Kovaleva^, W. Ozarowski and E. A. Stojković. Preliminary X-ray crystallographic and structural analyses of a bacteriophytochrome from Stigmatella aurantiaca. FASEB J. 25:928.15

2011    Toh, K.C., E. A. Stojković, I. H. van Stokkum, K. Moffat and J.T.M. Kennis. Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs. Phys Chem Chem Phys 13 (25): 11985-97.

2011    Toh, K.C., E. A. Stojković, A. Rupenyan, I.H.M. van Stokkum, M. Salumbides, M. Groot, K. Moffat and J. T.M. Kennis. Primary reactions of bacteriophytochrome observed with ultrafast mid-infrared spectroscopy. J Phys Chem A 115 (16): 3778-86.

2010    Toh, K.C., E. A. Stojković, I.H.M. van Stokkum, K. Moffat and J. T.M. Kennis. Proton transfer and hydrogen bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome. Proc Natl Acad  Sci USA 107 (20): 9170-9175.

Brehme M, Sverchkova A, and Voisine C. (2019) “Proteostasis Network Deregulation Signatures as Biomarkers as for Pharmacological Disease Intervention” Current Opinions in Systems Biology, Volume 15, June 2019, Pages 74-81.

Sandhof CA, Hoppe SO, Druffel-Ausustin S, Gallrein C, Kirstein J, Voisine C, and Nussbaum-Krammer C. (2019) “Reducing INS-IGF1 signaling protects against non-cell autonomous vesicle rupture caused by SNCA spreading” Autophagy, Jul 29:1-22.

Voisine C and Brehme M. (2019) “HSP90 et al.: Chaperome and Proteostasis Deregulation in Human Disease” Heat Shock Protein 90 in Human Diseases and Disorders. Series Editors: Alexzander A.A. Asea and Stuart Calderwood, Springer Press.

Richards Z, Marsili J, McCray T, Manlucu J, Zenner M, Voisine C, Murphy AB, Abdulkadir SA, Prins GS, and Nonn L. (2019) “Prostate stroma supports branching of human prostate organoids and maintains the transcriptional phenotype of tumoroids" iScience, Feb 22;12:304-317.

Neto MF, Nguyen QH, Marsili J, McFall SM, and Voisine C. (2016) “The nematode Caenorhabditis elegans displays a chemotaxis behavior to tuberculosis-specific odorants” Journal of Clinical Tuberculosis and Other Mycobacterial Diseases. Volume 4, August, Pages 44–49.